Some functions have changed their name without changing the functionality. A -- probably incomplete -- list follows
GAP 3 GAP 4
AgGroup PcGroup # (also composita)
ApplyFunc CallFuncList
Backtrace Where
CharTable CharacterTable # (also composita)
Denominator DenominatorRat
DepthVector PositionNot
Elements AsSSortedList
IsBijection IsBijective
IsFunc IsFunction
IsMat IsMatrix
IsRec IsRecord
IsSet IsSSortedList
LengthWord Length
NOfCyc Conductor
Numerator NumeratorRat
NormedVector NormedRowVector
Operation Action # (also composita)
Order(G,g) Order(g)
OrderMat Order
OrderPerm Order
RandomInvertableMat RandomInvertibleMat
RecFields RecNames
X Indeterminate
See Section Compatibility Mode for a way to make the old names available again.
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GAP 4 manual